aov.all.vars	aov.all.vars
aov.one.var	aov.one.var
apply.filter.function	apply.filter.function
background.correction	background.correction
baseline.correction	baseline.correction
boxplot.variables	boxplot.variables
calculate.ellipses	calculate.ellipses
calculate.shifts	calculate.shifts
check.dataset	check.dataset
clustering	clustering
convert.to.factor	convert.to.factor
correlations.dataset	correlations.dataset
count.missing.values	count.missing.values
count.missing.values.per.sample	count.missing.values.per.sample
count.missing.values.per.variable	count.missing.values.per.variable
create.dataset	create.dataset
data.correction	data.correction
dataset.from.peaks	dataset.from.peaks
dendrogram.plot	dendrogram.plot
dendrogram.plot.col	dendrogram.plot.col
feature.selection	feature.selection
filter.feature.selection	filter.feature.selection
find.equal.samples	find.equal.samples
first.derivative	first.derivative
flat.pattern.filter	flat.pattern.filter
flat.pattern.filter.percentage	flat.pattern.filter.percentage
flat.pattern.filter.threshold	flat.pattern.filter.threshold
fold.change	fold.change
get.all.intensities	get.all.intensities
get.data	get.data
get.data.as.df	get.data.as.df
get.data.value	get.data.value
get.data.values	get.data.values
get.intensity	get.intensity
get.metadata	get.metadata
get.metadata.value	get.metadata.value
get.metadata.var	get.metadata.var
get.overall.freq.list	get.overall.freq.list
get.peak.values	get.peak.values
get.sample.names	get.sample.names
get.type	get.type
get.value.label	get.value.label
get.x.label	get.x.label
get.x.values.as.num	get.x.values.as.num
get.x.values.as.text	get.x.values.as.text
heatmap.correlations	heatmap.correlations
hierarchical.clustering	hierarchical.clustering
impute.nas.knn	impute.nas.knn
impute.nas.linapprox	impute.nas.linapprox
impute.nas.mean	impute.nas.mean
impute.nas.median	impute.nas.median
impute.nas.value	impute.nas.value
is.spectra	is.spectra
kmeans.clustering	kmeans.clustering
kmeans.plot	kmeans.plot
kmeans.result.df	kmeans.result.df
merge.datasets	merge.datasets
metadata.as.variables	metadata.as.variables
missingvalues.imputation	missingvalues.imputation
msc.correction	msc.correction
multiClassSummary	multiClassSummary
multifactor.aov.all.vars	multifactor.aov.all.vars
multifactor.aov.onevar	multifactor.aov.onevar
normalize	normalize
num.samples	num.samples
num.x.values	num.x.values
offset.correction	offset.correction
pca.analysis.dataset	pca.analysis.dataset
pca.biplot	pca.biplot
pca.biplot3D	pca.biplot3D
pca.importance	pca.importance
pca.kmeans.plot2D	pca.kmeans.plot2D
pca.kmeans.plot3D	pca.kmeans.plot3D
pca.pairs.kmeans.plot	pca.pairs.kmeans.plot
pca.pairs.plot	pca.pairs.plot
pca.plot.3d	pca.plot.3d
pca.robust	pca.robust
pca.scoresplot2D	pca.scoresplot2D
pca.scoresplot3D	pca.scoresplot3D
pca.scoresplot3D.rgl	pca.scoresplot3D.rgl
pca.screeplot	pca.screeplot
peaks.per.sample	peaks.per.sample
peaks.per.samples	peaks.per.samples
plot.spectra	plot.spectra
plot.spectra.simple	plot.spectra.simple
predict.samples	predict.samples
read.csvs.folder	read.csvs.folder
read.data.csv	read.data.csv
read.dataset.csv	read.dataset.csv
read.metadata	read.metadata
read.multiple.csvs	read.multiple.csvs
recursive.feature.elimination	recursive.feature.elimination
remove.peaks.interval	remove.peaks.interval
remove.peaks.interval.sample.list	remove.peaks.interval.sample.list
replace.data.value	replace.data.value
replace.metadata.value	replace.metadata.value
savitzky.golay	savitzky.golay
set.metadata	set.metadata
set.sample.names	set.sample.names
set.value.label	set.value.label
set.x.label	set.x.label
set.x.values	set.x.values
shift.correction	shift.correction
smoothing.interpolation	smoothing.interpolation
smoothing.spcbin.hyperspec	smoothing.spcbin.hyperspec
smoothing.spcloess.hyperspec	smoothing.spcloess.hyperspec
sum.dataset	sum.dataset
summary.var.importance	summary.var.importance
train.and.predict	train.and.predict
train.classifier	train.classifier
train.models.performance	train.models.performance
tTests.dataset	tTests.dataset
tTests.pvalue	tTests.pvalue
univariate.analysis	univariate.analysis
values.per.peak	values.per.peak
var.importance	var.importance
variables.as.metadata	variables.as.metadata
x.values.to.indexes	x.values.to.indexes
xvalue.interval.to.indexes	xvalue.interval.to.indexes
